pISSN: 2671-4639
eISSN: 2671-4663
Number of SNPs and distance between SNPs before and after quality control
Chromosome no. |
Number of SNPs | Remove frequence |
Mean of interval SNP | ||
---|---|---|---|---|---|
Before QC | After QC | Before QC (kb) | After QC (kb) | ||
1 | 35,715 | 35,432 | 0.79% | 3.435 | 3.462 |
2 | 24,571 | 24,364 | 0.84% | 3.476 | 3.506 |
3 | 28,801 | 28,593 | 0.72% | 3.190 | 3.213 |
4 | 27,514 | 27,311 | 0.74% | 3.208 | 3.231 |
5 | 28,191 | 27,988 | 0.72% | 3.154 | 3.177 |
6 | 23,329 | 23,151 | 0.76% | 3.324 | 3.350 |
7 | 25,125 | 24,966 | 0.63% | 3.222 | 3.243 |
8 | 21,626 | 21,447 | 0.83% | 3.437 | 3.465 |
9 | 17,789 | 17,613 | 0.99% | 3.433 | 3.467 |
10 | 20,569 | 20,416 | 0.74% | 3.369 | 3.395 |
11 | 21,017 | 20,845 | 0.82% | 3.538 | 3.568 |
12 | 23,193 | 22,999 | 0.84% | 3.126 | 3.152 |
13 | 20,295 | 20,111 | 0.91% | 3.116 | 3.145 |
14 | 18,582 | 18,407 | 0.94% | 3.280 | 3.311 |
15 | 19,003 | 18,855 | 0.78% | 3.378 | 3.405 |
16 | 18,208 | 18,062 | 0.80% | 3.271 | 3.298 |
17 | 20,475 | 20,320 | 0.76% | 3.135 | 3.159 |
18 | 16,869 | 16,692 | 1.05% | 3.307 | 3.342 |
19 | 16,533 | 16,359 | 1.05% | 3.250 | 3.285 |
20 | 18,071 | 17,914 | 0.87% | 3.216 | 3.244 |
21 | 15,679 | 15,558 | 0.77% | 3.244 | 3.269 |
22 | 18,843 | 18,668 | 0.93% | 3.257 | 3.288 |
23 | 16,739 | 16,645 | 0.56% | 3.124 | 3.142 |
24 | 15,529 | 15,422 | 0.69% | 3.071 | 3.092 |
25 | 16,242 | 16,116 | 0.78% | 3.178 | 3.203 |
26 | 12,423 | 12,322 | 0.81% | 3.136 | 3.162 |
27 | 15,376 | 15,238 | 0.90% | 2.980 | 3.007 |
28 | 14,034 | 13,935 | 0.71% | 2.933 | 2.953 |
29 | 14,024 | 13,899 | 0.89% | 2.982 | 3.008 |
30 | 13,087 | 12,995 | 0.70% | 3.073 | 3.094 |
31 | 13,417 | 13,284 | 0.99% | 2.973 | 3.002 |
32 | 13,166 | 13,044 | 0.93% | 2.946 | 2.974 |
33 | 10,929 | 10,836 | 0.85% | 2.871 | 2.896 |
34 | 13,498 | 13,378 | 0.89% | 3.120 | 3.148 |
35 | 10,568 | 10,496 | 0.68% | 2.509 | 2.527 |
36 | 11,343 | 11,250 | 0.82% | 2.716 | 2.738 |
37 | 11,242 | 11,160 | 0.73% | 2.747 | 2.767 |
38 | 10,063 | 9,983 | 0.79% | 2.376 | 2.395 |
Total | 691,678 | 686,074 | 0.82% | 3.134 | 3.160 |